IL_8Y39_167
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y39_167 not in the Motif Atlas
- Geometric match to IL_4LFB_047
- Geometric discrepancy: 0.1243
- The information below is about IL_4LFB_047
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_68118.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 31
Unit IDs
8Y39|1|a|G|1072
8Y39|1|a|U|1073
8Y39|1|a|C|1074
*
8Y39|1|a|G|1203
8Y39|1|a|U|1204
8Y39|1|a|C|1205
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain e
- Small ribosomal subunit protein uS5
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain n
- Small ribosomal subunit protein uS14B
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