IL_8Y39_191
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCCAGACAACUAGGAUG*CAUUUAAAGAGUGCGUAAUAGCUCACUAGUCGAG
- Length
- 51 nucleotides
- Bulged bases
- 8Y39|1|A|A|1090, 8Y39|1|A|C|1096, 8Y39|1|A|U|1097, 8Y39|1|A|C|1136, 8Y39|1|A|U|1138, 8Y39|1|A|A|1139, 8Y39|1|A|A|1140, 8Y39|1|A|U|1152
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y39|1|A|C|1087
8Y39|1|A|C|1088
8Y39|1|A|C|1089
8Y39|1|A|A|1090
8Y39|1|A|G|1091
8Y39|1|A|A|1092
8Y39|1|A|C|1093
8Y39|1|A|A|1094
8Y39|1|A|A|1095
8Y39|1|A|C|1096
8Y39|1|A|U|1097
8Y39|1|A|A|1098
8Y39|1|A|G|1099
8Y39|1|A|G|1100
8Y39|1|A|A|1101
8Y39|1|A|U|1102
8Y39|1|A|G|1103
*
8Y39|1|A|C|1123
8Y39|1|A|A|1124
8Y39|1|A|U|1125
8Y39|1|A|U|1126
8Y39|1|A|U|1127
8Y39|1|A|A|1128
8Y39|1|A|A|1129
8Y39|1|A|A|1130
8Y39|1|A|G|1131
8Y39|1|A|A|1132
8Y39|1|A|G|1133
8Y39|1|A|U|1134
8Y39|1|A|G|1135
8Y39|1|A|C|1136
8Y39|1|A|G|1137
8Y39|1|A|U|1138
8Y39|1|A|A|1139
8Y39|1|A|A|1140
8Y39|1|A|U|1141
8Y39|1|A|A|1142
8Y39|1|A|G|1143
8Y39|1|A|C|1144
8Y39|1|A|U|1145
8Y39|1|A|C|1146
8Y39|1|A|A|1147
8Y39|1|A|C|1148
8Y39|1|A|U|1149
8Y39|1|A|A|1150
8Y39|1|A|G|1151
8Y39|1|A|U|1152
8Y39|1|A|C|1153
8Y39|1|A|G|1154
8Y39|1|A|A|1155
8Y39|1|A|G|1156
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL36
- Chain G
- Large ribosomal subunit protein uL6
Coloring options: