IL_8Y39_192

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUAAUCGUUUUAAUCGAUG*CUAGAUAGAAAAU

Length

32 nucleotides

Bulged bases

8Y39|1|A|U|1454, 8Y39|1|A|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y39|1|A|A|1447
8Y39|1|A|U|1448
8Y39|1|A|A|1449
8Y39|1|A|A|1450
8Y39|1|A|U|1451
8Y39|1|A|C|1452
8Y39|1|A|G|1453
8Y39|1|A|U|1454
8Y39|1|A|U|1455
8Y39|1|A|U|1456
8Y39|1|A|U|1457
8Y39|1|A|A|1458
8Y39|1|A|A|1459
8Y39|1|A|U|1460
8Y39|1|A|C|1461
8Y39|1|A|G|1462
8Y39|1|A|A|1463
8Y39|1|A|U|1464
8Y39|1|A|G|1465
*
8Y39|1|A|C|1624
8Y39|1|A|U|1625
8Y39|1|A|A|1626
8Y39|1|A|G|1627
8Y39|1|A|A|1628
8Y39|1|A|U|1629
8Y39|1|A|A|1630
8Y39|1|A|G|1631
8Y39|1|A|A|1632
8Y39|1|A|A|1633
8Y39|1|A|A|1634
8Y39|1|A|A|1635
8Y39|1|A|U|1636

Current chains

Chain A

23S ribosomal RNA

Nearby chains