IL_8Y39_197

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCACAGCUUGUACAGGAUAGGUA*UACCCUAGCUGUGU

Length

37 nucleotides

Bulged bases

8Y39|1|A|A|2132, 8Y39|1|A|U|2138, 8Y39|1|A|C|2140, 8Y39|1|A|U|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y39|1|A|G|2128
8Y39|1|A|C|2129
8Y39|1|A|A|2130
8Y39|1|A|C|2131
8Y39|1|A|A|2132
8Y39|1|A|G|2133
8Y39|1|A|C|2134
8Y39|1|A|U|2135
8Y39|1|A|U|2136
8Y39|1|A|G|2137
8Y39|1|A|U|2138
8Y39|1|A|A|2139
8Y39|1|A|C|2140
8Y39|1|A|A|2141
8Y39|1|A|G|2142
8Y39|1|A|G|2143
8Y39|1|A|A|2144
8Y39|1|A|U|2145
8Y39|1|A|A|2146
8Y39|1|A|G|2147
8Y39|1|A|G|2148
8Y39|1|A|U|2149
8Y39|1|A|A|2150
*
8Y39|1|A|U|2202
8Y39|1|A|A|2203
8Y39|1|A|C|2204
8Y39|1|A|C|2205
8Y39|1|A|C|2206
8Y39|1|A|U|2207
8Y39|1|A|A|2208
8Y39|1|A|G|2209
8Y39|1|A|C|2210
8Y39|1|A|U|2211
8Y39|1|A|G|2212
8Y39|1|A|U|2213
8Y39|1|A|G|2214
8Y39|1|A|U|2215

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain k

Small ribosomal subunit protein uS11