IL_8Y5M_049

3D structure

PDB id

8Y5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5M_049 not in the Motif Atlas

Geometric match to IL_5J7L_293

Geometric discrepancy: 0.1323

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8Y5M|1|1|C|1357
8Y5M|1|1|G|1358
8Y5M|1|1|A|1359
8Y5M|1|1|G|1360
8Y5M|1|1|G|1361
*
8Y5M|1|1|C|1370
8Y5M|1|1|G|1371
8Y5M|1|1|U|1372
8Y5M|1|1|A|1373
8Y5M|1|1|G|1374

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2

Chain x

50S ribosomal protein L28