IL_8Y5M_075
3D structure
- PDB id
- 8Y5M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 8Y5M|1|1|A|1938, 8Y5M|1|1|U|1944, 8Y5M|1|1|U|1963
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y5M_075 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1531
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
8Y5M|1|1|C|1934
8Y5M|1|1|G|1935
8Y5M|1|1|A|1936
8Y5M|1|1|A|1937
8Y5M|1|1|A|1938
8Y5M|1|1|U|1939
8Y5M|1|1|U|1940
8Y5M|1|1|C|1941
8Y5M|1|1|C|1942
8Y5M|1|1|U|1943
8Y5M|1|1|U|1944
8Y5M|1|1|G|1945
*
8Y5M|1|1|C|1961
8Y5M|1|1|C|1962
8Y5M|1|1|U|1963
8Y5M|1|1|G|1964
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- Transfer RNA; tRNA
- Chain b
- 50S ribosomal protein L2
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