IL_8Y5M_086

3D structure

PDB id

8Y5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUGGA*UCUGCAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y5M|1|1|G|2138
8Y5M|1|1|U|2139
8Y5M|1|1|G|2140
8Y5M|1|1|G|2141
8Y5M|1|1|A|2142
*
8Y5M|1|1|U|2149
8Y5M|1|1|C|2150
8Y5M|1|1|U|2151
8Y5M|1|1|G|2152
8Y5M|1|1|C|2153
8Y5M|1|1|A|2154
8Y5M|1|1|U|2155

Current chains

Chain 1

23S rRNA

Nearby chains

Chain L

30S ribosomal protein S7

Chain P

30S ribosomal protein S11

Chain a

Large ribosomal subunit protein uL1