IL_8Y5M_143

3D structure

PDB id

8Y5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5M_143 not in the Motif Atlas

Geometric match to IL_5J7L_031

Geometric discrepancy: 0.112

The information below is about IL_5J7L_031

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

8Y5M|1|3|G|654
8Y5M|1|3|A|655
*
8Y5M|1|3|U|751
8Y5M|1|3|G|752
8Y5M|1|3|A|753
8Y5M|1|3|C|754

Current chains

Chain 3

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S8

Chain T

30S ribosomal protein S15