IL_8Y5M_167

3D structure

PDB id

8Y5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

8Y5M|1|3|A|1257, 8Y5M|1|3|G|1278, 8Y5M|1|3|A|1280, 8Y5M|1|3|C|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y5M|1|3|G|1255
8Y5M|1|3|A|1256
8Y5M|1|3|A|1257
8Y5M|1|3|G|1258
*
8Y5M|1|3|C|1277
8Y5M|1|3|G|1278
8Y5M|1|3|G|1279
8Y5M|1|3|A|1280
8Y5M|1|3|C|1281
8Y5M|1|3|C|1282

Current chains

Chain 3

16S rRNA

Nearby chains

Chain H

30S ribosomal protein S3

Chain NG

Transcription termination/antitermination protein NusG

Chain O

30S ribosomal protein S10

Chain S

30S ribosomal protein S14