IL_8YDE_006
3D structure
- PDB id
- 8YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CCAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDE_006 not in the Motif Atlas
- Geometric match to IL_8B0X_071
- Geometric discrepancy: 0.1079
- The information below is about IL_8B0X_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8YDE|1|1|C|239
8YDE|1|1|C|240
8YDE|1|1|A|241
8YDE|1|1|G|242
8YDE|1|1|U|243
8YDE|1|1|A|244
8YDE|1|1|G|245
*
8YDE|1|1|C|253
8YDE|1|1|G|254
8YDE|1|1|A|255
8YDE|1|1|A|256
8YDE|1|1|C|257
8YDE|1|1|G|258
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L35
- Chain l
- 50S ribosomal protein L15
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