IL_8YDE_046

3D structure

PDB id

8YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDE_046 not in the Motif Atlas

Geometric match to IL_8B0X_111

Geometric discrepancy: 0.1619

The information below is about IL_8B0X_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89021.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8YDE|1|1|C|1351
8YDE|1|1|U|1352
8YDE|1|1|A|1353
8YDE|1|1|A|1354
8YDE|1|1|G|1355
*
8YDE|1|1|C|1376
8YDE|1|1|G|1377
8YDE|1|1|A|1378
8YDE|1|1|U|1379
8YDE|1|1|G|1380

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2