IL_8YDE_071
3D structure
- PDB id
- 8YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GCGAAAUUCCUUG*CCUGCAC
- Length
- 20 nucleotides
- Bulged bases
- 8YDE|1|1|A|1938, 8YDE|1|1|U|1944, 8YDE|1|1|U|1963
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDE|1|1|G|1933
8YDE|1|1|C|1934
8YDE|1|1|G|1935
8YDE|1|1|A|1936
8YDE|1|1|A|1937
8YDE|1|1|A|1938
8YDE|1|1|U|1939
8YDE|1|1|U|1940
8YDE|1|1|C|1941
8YDE|1|1|C|1942
8YDE|1|1|U|1943
8YDE|1|1|U|1944
8YDE|1|1|G|1945
*
8YDE|1|1|C|1961
8YDE|1|1|C|1962
8YDE|1|1|U|1963
8YDE|1|1|G|1964
8YDE|1|1|C|1965
8YDE|1|1|A|1966
8YDE|1|1|C|1967
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- Transfer RNA; tRNA
- Chain 6
- Transfer RNA; tRNA
- Chain b
- 50S ribosomal protein L2
Coloring options: