IL_8YDE_086

3D structure

PDB id

8YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UGAUA*UGUUUG

Length

11 nucleotides

Bulged bases

8YDE|1|1|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDE|1|1|U|2457
8YDE|1|1|G|2458
8YDE|1|1|A|2459
8YDE|1|1|U|2460
8YDE|1|1|A|2461
*
8YDE|1|1|U|2489
8YDE|1|1|G|2490
8YDE|1|1|U|2491
8YDE|1|1|U|2492
8YDE|1|1|U|2493
8YDE|1|1|G|2494

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain m

50S ribosomal protein L16