IL_8YDE_125

3D structure

PDB id

8YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDE_125 not in the Motif Atlas

Geometric match to IL_8B0X_017

Geometric discrepancy: 0.1774

The information below is about IL_8B0X_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

8YDE|1|3|A|371
8YDE|1|3|C|372
8YDE|1|3|A|373
8YDE|1|3|A|374
8YDE|1|3|U|375
*
8YDE|1|3|A|389
8YDE|1|3|U|390

Current chains

Chain 3

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16