IL_8YDE_132
3D structure
- PDB id
- 8YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CGUGCCAG*CGGUAAUACG
- Length
- 18 nucleotides
- Bulged bases
- 8YDE|1|3|U|531, 8YDE|1|3|A|532, 8YDE|1|3|U|534, 8YDE|1|3|A|535
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDE|1|3|C|514
8YDE|1|3|G|515
8YDE|1|3|U|516
8YDE|1|3|G|517
8YDE|1|3|C|518
8YDE|1|3|C|519
8YDE|1|3|A|520
8YDE|1|3|G|521
*
8YDE|1|3|C|528
8YDE|1|3|G|529
8YDE|1|3|G|530
8YDE|1|3|U|531
8YDE|1|3|A|532
8YDE|1|3|A|533
8YDE|1|3|U|534
8YDE|1|3|A|535
8YDE|1|3|C|536
8YDE|1|3|G|537
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 4
- mRNA
- Chain 5
- Transfer RNA; tRNA
- Chain H
- 30S ribosomal protein S3
- Chain I
- 30S ribosomal protein S4
- Chain Q
- 30S ribosomal protein S12
Coloring options: