IL_8YDE_161
3D structure
- PDB id
- 8YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UACAAAG*CAUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8YDE|1|3|U|1286
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDE_161 not in the Motif Atlas
- Geometric match to IL_8B0X_053
- Geometric discrepancy: 0.0911
- The information below is about IL_8B0X_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12056.1
- Basepair signature
- cWW-L-R-R-bif-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YDE|1|3|U|1247
8YDE|1|3|A|1248
8YDE|1|3|C|1249
8YDE|1|3|A|1250
8YDE|1|3|A|1251
8YDE|1|3|A|1252
8YDE|1|3|G|1253
*
8YDE|1|3|C|1284
8YDE|1|3|A|1285
8YDE|1|3|U|1286
8YDE|1|3|A|1287
8YDE|1|3|A|1288
8YDE|1|3|A|1289
8YDE|1|3|G|1290
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S7
- Chain N
- 30S ribosomal protein S9
- Chain O
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
Coloring options: