IL_8YDF_001
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDF_001 not in the Motif Atlas
- Geometric match to IL_8B0X_065
- Geometric discrepancy: 0.1368
- The information below is about IL_8B0X_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
8YDF|1|1|G|24
8YDF|1|1|U|25
8YDF|1|1|G|26
8YDF|1|1|G|27
8YDF|1|1|A|28
8YDF|1|1|U|29
8YDF|1|1|G|30
*
8YDF|1|1|C|510
8YDF|1|1|U|511
8YDF|1|1|G|512
8YDF|1|1|A|513
8YDF|1|1|A|514
8YDF|1|1|A|515
8YDF|1|1|C|516
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L32
- Chain q
- 50S ribosomal protein L20
- Chain s
- 50S ribosomal protein L22
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