IL_8YDF_008

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDF_008 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.2944

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8YDF|1|1|C|274
8YDF|1|1|C|275
8YDF|1|1|U|276
8YDF|1|1|G|277
8YDF|1|1|A|278
8YDF|1|1|A|279
8YDF|1|1|U|280
8YDF|1|1|C|281
*
8YDF|1|1|G|359
8YDF|1|1|U|360
8YDF|1|1|G|361
8YDF|1|1|A|362
8YDF|1|1|G|363

Current chains

Chain 1

23S rRNA

Nearby chains