Loop IL_8YDF

3D structure

PDB id: 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
Description: E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å

Loop

Sequence: UGGGAGGCUUUGAAGUGUGGA*UCUGCAUGGAGCCGACCUUGAAAUACCA
Length: 49 nucleotides
Bulged bases: 8YDF|1|1|U|2132, 8YDF|1|1|G|2157, 8YDF|1|1|C|2164, 8YDF|1|1|U|2172
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8YDF|1|1|U|2122
8YDF|1|1|G|2123
8YDF|1|1|G|2124
8YDF|1|1|G|2125
8YDF|1|1|A|2126
8YDF|1|1|G|2127
8YDF|1|1|G|2128
8YDF|1|1|C|2129
8YDF|1|1|U|2130
8YDF|1|1|U|2131
8YDF|1|1|U|2132
8YDF|1|1|G|2133
8YDF|1|1|A|2134
8YDF|1|1|A|2135
8YDF|1|1|G|2136
8YDF|1|1|U|2137
8YDF|1|1|G|2138
8YDF|1|1|U|2139
8YDF|1|1|G|2140
8YDF|1|1|G|2141
8YDF|1|1|A|2142
*
8YDF|1|1|U|2149
8YDF|1|1|C|2150
8YDF|1|1|U|2151
8YDF|1|1|G|2152
8YDF|1|1|C|2153
8YDF|1|1|A|2154
8YDF|1|1|U|2155
8YDF|1|1|G|2156
8YDF|1|1|G|2157
8YDF|1|1|A|2158
8YDF|1|1|G|2159
8YDF|1|1|C|2160
8YDF|1|1|C|2161
8YDF|1|1|G|2162
8YDF|1|1|A|2163
8YDF|1|1|C|2164
8YDF|1|1|C|2165
8YDF|1|1|U|2166
8YDF|1|1|U|2167
8YDF|1|1|G|2168
8YDF|1|1|A|2169
8YDF|1|1|A|2170
8YDF|1|1|A|2171
8YDF|1|1|U|2172
8YDF|1|1|A|2173
8YDF|1|1|C|2174
8YDF|1|1|C|2175
8YDF|1|1|A|2176

Current chains

Chain 1: 23S rRNA

Nearby chains

Chain 7: Transfer RNA; tRNA
Chain P: 30S ribosomal protein S11

IL_8YDF_080