IL_8YDF_088

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDF_088 not in the Motif Atlas

Geometric match to IL_4WF9_094

Geometric discrepancy: 0.1698

The information below is about IL_4WF9_094

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_46637.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

21

Unit IDs

8YDF|1|1|C|2507
8YDF|1|1|G|2508
*
8YDF|1|1|U|2580
8YDF|1|1|G|2581
8YDF|1|1|G|2582

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain c

50S ribosomal protein L3