IL_8YDF_091

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

8YDF|1|1|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDF_091 not in the Motif Atlas

Geometric match to IL_8B0X_157

Geometric discrepancy: 0.1698

The information below is about IL_8B0X_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

8YDF|1|1|U|2522
8YDF|1|1|G|2523
*
8YDF|1|1|C|2540
8YDF|1|1|A|2541
8YDF|1|1|A|2542
8YDF|1|1|G|2543

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain j

50S ribosomal protein L13