IL_8YDF_135

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDF_135 not in the Motif Atlas

Geometric match to IL_8B0X_027

Geometric discrepancy: 0.1342

The information below is about IL_8B0X_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

8YDF|1|3|U|594
8YDF|1|3|A|595
8YDF|1|3|A|596
*
8YDF|1|3|U|644
8YDF|1|3|G|645

Current chains

Chain 3

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S8

Chain V

30S ribosomal protein S17