IL_8YDF_145
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDF_145 not in the Motif Atlas
- Geometric match to IL_8B0X_037
- Geometric discrepancy: 0.0644
- The information below is about IL_8B0X_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8YDF|1|3|G|887
8YDF|1|3|G|888
8YDF|1|3|A|889
8YDF|1|3|G|890
8YDF|1|3|U|891
8YDF|1|3|A|892
8YDF|1|3|C|893
8YDF|1|3|G|894
*
8YDF|1|3|U|905
8YDF|1|3|A|906
8YDF|1|3|A|907
8YDF|1|3|A|908
8YDF|1|3|A|909
8YDF|1|3|C|910
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 30S ribosomal protein S12
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