IL_8YDF_154
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 8YDF|1|3|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDF_154 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.1265
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8YDF|1|3|U|1052
8YDF|1|3|G|1053
8YDF|1|3|C|1054
8YDF|1|3|A|1055
8YDF|1|3|U|1056
*
8YDF|1|3|A|1204
8YDF|1|3|U|1205
8YDF|1|3|G|1206
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain H
- 30S ribosomal protein S3
- Chain O
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
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