IL_8YDF_162
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GAAG*CGGACC
- Length
- 10 nucleotides
- Bulged bases
- 8YDF|1|3|A|1257, 8YDF|1|3|G|1278, 8YDF|1|3|A|1280, 8YDF|1|3|C|1281
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDF_162 not in the Motif Atlas
- Geometric match to IL_8B0X_054
- Geometric discrepancy: 0.3032
- The information below is about IL_8B0X_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_08849.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YDF|1|3|G|1255
8YDF|1|3|A|1256
8YDF|1|3|A|1257
8YDF|1|3|G|1258
*
8YDF|1|3|C|1277
8YDF|1|3|G|1278
8YDF|1|3|G|1279
8YDF|1|3|A|1280
8YDF|1|3|C|1281
8YDF|1|3|C|1282
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S3
- Chain NG
- Transcription termination/antitermination protein NusG
- Chain O
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
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