IL_8YDF_172

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

8YDF|1|3|A|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDF_172 not in the Motif Atlas

Geometric match to IL_4V9F_032

Geometric discrepancy: 0.2938

The information below is about IL_4V9F_032

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8YDF|1|3|U|1440
8YDF|1|3|A|1441
8YDF|1|3|G|1442
*
8YDF|1|3|C|1460
8YDF|1|3|G|1461

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Y

30S ribosomal protein S20

Chain p

50S ribosomal protein L19