IL_8YDI_004

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

8YDI|1|1|U|100, 8YDI|1|1|U|102

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDI|1|1|G|81
8YDI|1|1|U|82
8YDI|1|1|A|83
8YDI|1|1|A|84
8YDI|1|1|G|85
*
8YDI|1|1|C|97
8YDI|1|1|G|98
8YDI|1|1|U|99
8YDI|1|1|U|100
8YDI|1|1|A|101
8YDI|1|1|U|102
8YDI|1|1|A|103
8YDI|1|1|A|104
8YDI|1|1|C|105

Current chains

Chain 1

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L24

Chain y

50S ribosomal protein L29