IL_8YDI_016

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

8YDI|1|1|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_016 not in the Motif Atlas

Geometric match to IL_8B0X_081

Geometric discrepancy: 0.1036

The information below is about IL_8B0X_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8YDI|1|1|G|697
8YDI|1|1|C|698
*
8YDI|1|1|G|763
8YDI|1|1|A|764
8YDI|1|1|C|765

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2