IL_8YDI_018

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_018 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.1231

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8YDI|1|1|U|703
8YDI|1|1|G|704
8YDI|1|1|A|705
8YDI|1|1|A|706
8YDI|1|1|G|707
*
8YDI|1|1|U|724
8YDI|1|1|G|725
8YDI|1|1|G|726
8YDI|1|1|A|727
8YDI|1|1|G|728

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2