IL_8YDI_041

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

8YDI|1|1|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_041 not in the Motif Atlas

Geometric match to IL_4V9F_044

Geometric discrepancy: 0.331

The information below is about IL_4V9F_044

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

8YDI|1|1|G|1087
8YDI|1|1|A|1088
8YDI|1|1|A|1089
8YDI|1|1|A|1090
*
8YDI|1|1|U|1101
8YDI|1|1|C|1102

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain i

50S ribosomal protein L11