IL_8YDI_052

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

8YDI|1|1|U|1460

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_052 not in the Motif Atlas

Geometric match to IL_8VMA_002

Geometric discrepancy: 0.1813

The information below is about IL_8VMA_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8YDI|1|1|G|1450
8YDI|1|1|C|1451
*
8YDI|1|1|G|1459
8YDI|1|1|U|1460
8YDI|1|1|C|1461

Current chains

Chain 1

23S rRNA

Nearby chains