IL_8YDI_059

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_059 not in the Motif Atlas

Geometric match to IL_8B0X_124

Geometric discrepancy: 0.2249

The information below is about IL_8B0X_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10432.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

10

Unit IDs

8YDI|1|1|G|1663
8YDI|1|1|A|1664
8YDI|1|1|A|1665
*
8YDI|1|1|U|1995
8YDI|1|1|C|1996
8YDI|1|1|C|1997

Current chains

Chain 1

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain k

50S ribosomal protein L14

Chain p

50S ribosomal protein L19