IL_8YDI_061

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8YDI|1|1|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_061 not in the Motif Atlas

Geometric match to IL_8B0X_127

Geometric discrepancy: 0.1295

The information below is about IL_8B0X_127

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8YDI|1|1|C|1686
8YDI|1|1|G|1687
8YDI|1|1|U|1688
8YDI|1|1|A|1689
8YDI|1|1|A|1690
8YDI|1|1|C|1691
*
8YDI|1|1|G|1696
8YDI|1|1|G|1697
8YDI|1|1|A|1698
8YDI|1|1|G|1699
8YDI|1|1|A|1700
8YDI|1|1|A|1701
8YDI|1|1|G|1702

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

16S rRNA

Chain b

50S ribosomal protein L2