IL_8YDI_074

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8YDI|1|1|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_074 not in the Motif Atlas

Geometric match to IL_8B0X_182

Geometric discrepancy: 0.1239

The information below is about IL_8B0X_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8YDI|1|1|G|2067
8YDI|1|1|U|2068
8YDI|1|1|G|2069
*
8YDI|1|1|C|2442
8YDI|1|1|C|2443

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15