Loop IL_8YDI

3D structure

PDB id: 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
Description: E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.6 Å

Loop

Sequence: UGGGAGGCUUUGAAGUGUGGA*UCUGCAUGGAGCCGACCUUGAAAUACCA
Length: 49 nucleotides
Bulged bases: 8YDI|1|1|U|2132, 8YDI|1|1|G|2157, 8YDI|1|1|C|2164, 8YDI|1|1|U|2172
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8YDI|1|1|U|2122
8YDI|1|1|G|2123
8YDI|1|1|G|2124
8YDI|1|1|G|2125
8YDI|1|1|A|2126
8YDI|1|1|G|2127
8YDI|1|1|G|2128
8YDI|1|1|C|2129
8YDI|1|1|U|2130
8YDI|1|1|U|2131
8YDI|1|1|U|2132
8YDI|1|1|G|2133
8YDI|1|1|A|2134
8YDI|1|1|A|2135
8YDI|1|1|G|2136
8YDI|1|1|U|2137
8YDI|1|1|G|2138
8YDI|1|1|U|2139
8YDI|1|1|G|2140
8YDI|1|1|G|2141
8YDI|1|1|A|2142
*
8YDI|1|1|U|2149
8YDI|1|1|C|2150
8YDI|1|1|U|2151
8YDI|1|1|G|2152
8YDI|1|1|C|2153
8YDI|1|1|A|2154
8YDI|1|1|U|2155
8YDI|1|1|G|2156
8YDI|1|1|G|2157
8YDI|1|1|A|2158
8YDI|1|1|G|2159
8YDI|1|1|C|2160
8YDI|1|1|C|2161
8YDI|1|1|G|2162
8YDI|1|1|A|2163
8YDI|1|1|C|2164
8YDI|1|1|C|2165
8YDI|1|1|U|2166
8YDI|1|1|U|2167
8YDI|1|1|G|2168
8YDI|1|1|A|2169
8YDI|1|1|A|2170
8YDI|1|1|A|2171
8YDI|1|1|U|2172
8YDI|1|1|A|2173
8YDI|1|1|C|2174
8YDI|1|1|C|2175
8YDI|1|1|A|2176

Current chains

Chain 1: 23S rRNA

Nearby chains

Chain 7: tRNA(fMet)
Chain P: 30S ribosomal protein S11

IL_8YDI_080