IL_8YDI_106
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDI_106 not in the Motif Atlas
- Geometric match to IL_8B0X_174
- Geometric discrepancy: 0.1549
- The information below is about IL_8B0X_174
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.12
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 12
Unit IDs
8YDI|1|2|A|34
8YDI|1|2|C|35
8YDI|1|2|C|36
8YDI|1|2|C|37
8YDI|1|2|C|38
*
8YDI|1|2|G|44
8YDI|1|2|A|45
8YDI|1|2|A|46
8YDI|1|2|C|47
8YDI|1|2|U|48
Current chains
- Chain 2
- 5S rRNA
Nearby chains
- Chain 1
- 23S rRNA
- Chain A
- 50S ribosomal protein L31
- Chain e
- 50S ribosomal protein L5
- Chain o
- 50S ribosomal protein L18
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