IL_8YDI_117

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_117 not in the Motif Atlas

Geometric match to IL_8B0X_010

Geometric discrepancy: 0.1256

The information below is about IL_8B0X_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8YDI|1|3|C|132
8YDI|1|3|U|133
8YDI|1|3|G|134
8YDI|1|3|C|135
8YDI|1|3|C|136
*
8YDI|1|3|G|227
8YDI|1|3|A|228
8YDI|1|3|U|229
8YDI|1|3|G|230

Current chains

Chain 3

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16

Chain Y

30S ribosomal protein S20