IL_8YDI_133

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8YDI|1|3|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_133 not in the Motif Atlas

Geometric match to IL_8B0X_025

Geometric discrepancy: 0.1093

The information below is about IL_8B0X_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8YDI|1|3|C|569
8YDI|1|3|G|570
8YDI|1|3|U|571
8YDI|1|3|A|572
8YDI|1|3|A|573
8YDI|1|3|A|574
8YDI|1|3|G|575
*
8YDI|1|3|C|880
8YDI|1|3|G|881

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S12

Chain V

30S ribosomal protein S17