IL_8YDI_140
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UAGAG*UGGA
- Length
- 9 nucleotides
- Bulged bases
- 8YDI|1|3|A|665
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDI_140 not in the Motif Atlas
- Geometric match to IL_8B0X_032
- Geometric discrepancy: 0.0929
- The information below is about IL_8B0X_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8YDI|1|3|U|662
8YDI|1|3|A|663
8YDI|1|3|G|664
8YDI|1|3|A|665
8YDI|1|3|G|666
*
8YDI|1|3|U|740
8YDI|1|3|G|741
8YDI|1|3|G|742
8YDI|1|3|A|743
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain K
- 30S ribosomal protein S6, fully modified isoform
- Chain T
- 30S ribosomal protein S15
- Chain W
- 30S ribosomal protein S18
Coloring options: