IL_8YDI_144

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_144 not in the Motif Atlas

Geometric match to IL_8B0X_036

Geometric discrepancy: 0.0823

The information below is about IL_8B0X_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8YDI|1|3|C|779
8YDI|1|3|A|780
8YDI|1|3|A|781
8YDI|1|3|A|782
8YDI|1|3|C|783
*
8YDI|1|3|G|799
8YDI|1|3|G|800
8YDI|1|3|U|801
8YDI|1|3|A|802
8YDI|1|3|G|803

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 1

23S rRNA

Chain P

30S ribosomal protein S11

Chain Z

30S ribosomal protein S21