IL_8YDI_163
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CGACC*GCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDI_163 not in the Motif Atlas
- Geometric match to IL_8B0X_055
- Geometric discrepancy: 0.1752
- The information below is about IL_8B0X_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87767.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8YDI|1|3|C|1259
8YDI|1|3|G|1260
8YDI|1|3|A|1261
8YDI|1|3|C|1262
8YDI|1|3|C|1263
*
8YDI|1|3|G|1272
8YDI|1|3|C|1273
8YDI|1|3|A|1274
8YDI|1|3|A|1275
8YDI|1|3|G|1276
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain NG
- Transcription termination/antitermination protein NusG
- Chain S
- 30S ribosomal protein S14
- Chain X
- 30S ribosomal protein S19
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