IL_8YDI_169

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDI_169 not in the Motif Atlas

Geometric match to IL_8B0X_060

Geometric discrepancy: 0.0735

The information below is about IL_8B0X_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8YDI|1|3|C|1412
8YDI|1|3|A|1413
8YDI|1|3|U|1414
*
8YDI|1|3|G|1486
8YDI|1|3|G|1487
8YDI|1|3|G|1488

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 1

23S rRNA

Chain Q

30S ribosomal protein S12