IL_8YDJ_028

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GGCAAG*CAACCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDJ|1|1|G|874
8YDJ|1|1|G|875
8YDJ|1|1|C|876
8YDJ|1|1|A|877
8YDJ|1|1|A|878
8YDJ|1|1|G|879
*
8YDJ|1|1|C|898
8YDJ|1|1|A|899
8YDJ|1|1|A|900
8YDJ|1|1|C|901
8YDJ|1|1|C|902
8YDJ|1|1|C|903

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain m

50S ribosomal protein L16