IL_8YDJ_039

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GUUGGC*GCCAUC

Length

12 nucleotides

Bulged bases

8YDJ|1|1|U|1060, 8YDJ|1|1|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDJ|1|1|G|1059
8YDJ|1|1|U|1060
8YDJ|1|1|U|1061
8YDJ|1|1|G|1062
8YDJ|1|1|G|1063
8YDJ|1|1|C|1064
*
8YDJ|1|1|G|1074
8YDJ|1|1|C|1075
8YDJ|1|1|C|1076
8YDJ|1|1|A|1077
8YDJ|1|1|U|1078
8YDJ|1|1|C|1079

Current chains

Chain 1

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L11