IL_8YDJ_067

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

8YDJ|1|1|C|1838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDJ_067 not in the Motif Atlas

Geometric match to IL_8B0X_133

Geometric discrepancy: 0.2569

The information below is about IL_8B0X_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

8YDJ|1|1|C|1837
8YDJ|1|1|C|1838
8YDJ|1|1|G|1839
8YDJ|1|1|G|1840
*
8YDJ|1|1|C|1902
8YDJ|1|1|G|1903

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2