IL_8YDJ_082

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GCUUUGAAGUGU*GCAUGGAGC

Length

21 nucleotides

Bulged bases

8YDJ|1|1|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDJ|1|1|G|2128
8YDJ|1|1|C|2129
8YDJ|1|1|U|2130
8YDJ|1|1|U|2131
8YDJ|1|1|U|2132
8YDJ|1|1|G|2133
8YDJ|1|1|A|2134
8YDJ|1|1|A|2135
8YDJ|1|1|G|2136
8YDJ|1|1|U|2137
8YDJ|1|1|G|2138
8YDJ|1|1|U|2139
*
8YDJ|1|1|G|2152
8YDJ|1|1|C|2153
8YDJ|1|1|A|2154
8YDJ|1|1|U|2155
8YDJ|1|1|G|2156
8YDJ|1|1|G|2157
8YDJ|1|1|A|2158
8YDJ|1|1|G|2159
8YDJ|1|1|C|2160

Current chains

Chain 1

23S rRNA

Nearby chains

Chain a

Large ribosomal subunit protein uL1