IL_8YDJ_089

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UGAUAC*GUGUUUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDJ|1|1|U|2457
8YDJ|1|1|G|2458
8YDJ|1|1|A|2459
8YDJ|1|1|U|2460
8YDJ|1|1|A|2461
8YDJ|1|1|C|2462
*
8YDJ|1|1|G|2488
8YDJ|1|1|U|2489
8YDJ|1|1|G|2490
8YDJ|1|1|U|2491
8YDJ|1|1|U|2492
8YDJ|1|1|U|2493
8YDJ|1|1|G|2494

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain m

50S ribosomal protein L16