IL_8YDJ_118

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GGG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDJ_118 not in the Motif Atlas

Geometric match to IL_8GLP_157

Geometric discrepancy: 0.2183

The information below is about IL_8GLP_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8YDJ|1|3|G|144
8YDJ|1|3|G|145
8YDJ|1|3|G|146
*
8YDJ|1|3|C|176
8YDJ|1|3|G|177
8YDJ|1|3|C|178

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Y

30S ribosomal protein S20