IL_8YDJ_159
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GAAGCGACC*GCAAGCGGACC
- Length
- 20 nucleotides
- Bulged bases
- 8YDJ|1|3|A|1257, 8YDJ|1|3|G|1278, 8YDJ|1|3|A|1280, 8YDJ|1|3|C|1281
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDJ|1|3|G|1255
8YDJ|1|3|A|1256
8YDJ|1|3|A|1257
8YDJ|1|3|G|1258
8YDJ|1|3|C|1259
8YDJ|1|3|G|1260
8YDJ|1|3|A|1261
8YDJ|1|3|C|1262
8YDJ|1|3|C|1263
*
8YDJ|1|3|G|1272
8YDJ|1|3|C|1273
8YDJ|1|3|A|1274
8YDJ|1|3|A|1275
8YDJ|1|3|G|1276
8YDJ|1|3|C|1277
8YDJ|1|3|G|1278
8YDJ|1|3|G|1279
8YDJ|1|3|A|1280
8YDJ|1|3|C|1281
8YDJ|1|3|C|1282
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S3
- Chain NG
- Transcription termination/antitermination protein NusG
- Chain O
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
- Chain X
- 30S ribosomal protein S19
Coloring options: