IL_8YE6_002

3D structure

PDB id

8YE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Cas9-sgRNA-A32 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

AGAG*CAAGUU

Length

10 nucleotides

Bulged bases

8YE6|1|C|A|28, 8YE6|1|C|U|44

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YE6_002 not in the Motif Atlas

Geometric match to IL_4ZT0_003

Geometric discrepancy: 0.1113

The information below is about IL_4ZT0_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82683.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

8YE6|1|C|A|26
8YE6|1|C|G|27
8YE6|1|C|A|28
8YE6|1|C|G|29
*
8YE6|1|C|C|40
8YE6|1|C|A|41
8YE6|1|C|A|42
8YE6|1|C|G|43
8YE6|1|C|U|44
8YE6|1|C|U|45

Current chains

Chain C

RNA (92-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1